https://nshen7.r-universe.devRecent package updates in nshen7R-universehttps://github.com/nshen7.pnghttps://nshen7.r-universe.devWed, 23 Sep 2026 03:54:10 GMTkkorthauer@cmmt.ubc.ca (Keegan Korthauer)The R package decemedip is a novel computational paradigm developed for inferring the relative abundances of cell types and tissues measure by methylated DNA immunoprecipitation sequencing (MeDIP-Seq). This paradigm allows using reference data from other technologies such as microarray or WGBS.https://github.com/r-universe/bioc/actions/runs/40069512392Wed, 23 Sep 2026 03:54:10 GMTdecemedip1.1.3successhttps://bioc.r-universe.devhttps://github.com/bioc/decemediphow-to-use-decemedip.Rmdhow-to-use-decemedip.htmlCell type deconvolutiond of (cf)MeDIP-seq data with decemedip2025-01-31 20:13:032025-10-06 18:11:47kkorthauer@cmmt.ubc.ca (Keegan Korthauer)High-throughput single-cell measurements of DNA methylation allows studying inter-cellular epigenetic heterogeneity, but this task faces the challenges of sparsity and noise. We present vmrseq, a statistical method that overcomes these challenges and identifies variably methylated regions accurately and robustly.https://github.com/r-universe/bioc/actions/runs/37452800903Thu, 06 Aug 2026 19:18:23 GMTvmrseq1.5.1successhttps://bioc.r-universe.devhttps://github.com/bioc/vmrseqvmrseq-vignette.Rmdvmrseq-vignette.htmlAnalyzing single-cell bisulfite sequencing data with vmrseq2023-05-24 00:35:472025-04-30 15:57:54